User:Michael Strong/H1N1/NS2/MSA

H1N1 Swine Flu Multiple Sequence Alignment of NS2 Protein, 53 sequences


All Polymorphisms

gi|229299513_A/Texas/05/2009       MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229368685_A/Denmark/513/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|227831790_A/Texas/05/2009       MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229299533_A/Texas/04/2009       MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|227977168_A/California/07/2     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|227977144_A/California/07/2     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|227977112_A/California/04/2     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|227809840_A/California/04/2     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|227977156_A/California/08/2     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|227977124_A/California/08/2     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229396499_A/Ohio/07/2009        MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229536008_A/Kansas/03/2009      MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229396476_A/New_York/19/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229396461_A/Texas/06/2009       MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229396401_A/New_York/31/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229396412_A/New_York/23/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229396386_A/New_York/18/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229396448_A/New_York/15/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229396350_A/New_York/12/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229396372_A/New_York/11/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229396432_A/New_York/10/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229396362_A/New_York/06/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229484057_A/Mexico/InDRE448     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229484060_A/Canada-ON/RV152     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229484055_A/Canada-NS/RV153     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229462704_A/Valencia/GP4/20     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229462716_A/Pais_Vasco/GP20     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229462728_A/Castilla-La_Man     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229462692_A/Castilla-La_Man     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229535810_A/Texas/09/2009       MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229535992_A/South_Carolina/     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229536032_A/Minnesota/02/20     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229536116_A/Michigan/02/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229535828_A/California/14/2     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229536017_A/Arizona/01/2009     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229783408_A/New_York/1682/2     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229783387_A/New_York/1669/2     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229892757_A/Mexico/InDRE411     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229892760_A/Canada-ON/RV152     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229892769_A/Canada-ON/RV152     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229892766_A/Canada-NS/RV153     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229892763_A/Canada-AB/RV153     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|237511857_A/Mexico/4604/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|237511866_A/Mexico/4603/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|237511860_A/Mexico/4486/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|237511872_A/Mexico/4115/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|237511869_A/Mexico/4108/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229783374_A/Korea/01/2009       MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229892755_A/Canada-NS/RV153     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229598887_A/Texas/15/2009       MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|228017754_A/California/06/2     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|229536106_A/Nebraska/02/200     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 gi|237624336_A/swine/Alberta/O     MDSNTMSSFQDILMRMSKMQLGSSSEDLNGMVTRFESLKIYRDSLGETVM 50 **************************************************

gi|229299513_A/Texas/05/2009       RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229368685_A/Denmark/513/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|227831790_A/Texas/05/2009       RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229299533_A/Texas/04/2009       RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|227977168_A/California/07/2     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|227977144_A/California/07/2     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|227977112_A/California/04/2     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|227809840_A/California/04/2     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|227977156_A/California/08/2     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|227977124_A/California/08/2     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229396499_A/Ohio/07/2009        RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229536008_A/Kansas/03/2009      RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229396476_A/New_York/19/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229396461_A/Texas/06/2009       RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229396401_A/New_York/31/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229396412_A/New_York/23/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229396386_A/New_York/18/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229396448_A/New_York/15/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229396350_A/New_York/12/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229396372_A/New_York/11/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229396432_A/New_York/10/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229396362_A/New_York/06/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229484057_A/Mexico/InDRE448     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229484060_A/Canada-ON/RV152     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229484055_A/Canada-NS/RV153     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229462704_A/Valencia/GP4/20     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229462716_A/Pais_Vasco/GP20     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229462728_A/Castilla-La_Man     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229462692_A/Castilla-La_Man     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229535810_A/Texas/09/2009       RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229535992_A/South_Carolina/     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229536032_A/Minnesota/02/20     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229536116_A/Michigan/02/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229535828_A/California/14/2     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229536017_A/Arizona/01/2009     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229783408_A/New_York/1682/2     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229783387_A/New_York/1669/2     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229892757_A/Mexico/InDRE411     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229892760_A/Canada-ON/RV152     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229892769_A/Canada-ON/RV152     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229892766_A/Canada-NS/RV153     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229892763_A/Canada-AB/RV153     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|237511857_A/Mexico/4604/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|237511866_A/Mexico/4603/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|237511860_A/Mexico/4486/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|237511872_A/Mexico/4115/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|237511869_A/Mexico/4108/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229783374_A/Korea/01/2009       RMGDLHYLQSRNKKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229892755_A/Canada-NS/RV153     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|229598887_A/Texas/15/2009       RMGDLHYLQSRNEKWRKQLGQKFEEIRWLIEEMRHRLKATENSFEQITFM 100 gi|228017754_A/California/06/2     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKETENSFEQITFM 100 gi|229536106_A/Nebraska/02/200     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKETENSFEQITFM 100 gi|237624336_A/swine/Alberta/O     RMGDLHYLQSRNEKWREQLGQKFEEIRWLIEEMRHRLKETENSFEQITFM 100 ************:***:********************* ***********

gi|229299513_A/Texas/05/2009       QALQLLLEVEQEIRAFSFQLI 121 gi|229368685_A/Denmark/513/200     QALQLLLEVEQEIRAFS 117 gi|227831790_A/Texas/05/2009       QALQLLLEVEQEIRAFSFQLI 121 gi|229299533_A/Texas/04/2009       QALQLLLEVEQEIRAFSFQLI 121 gi|227977168_A/California/07/2     QALQLLLEVEQEIRAFSFQLI 121 gi|227977144_A/California/07/2     QALQLLLEVEQEIRAFSFQLI 121 gi|227977112_A/California/04/2     QALQLLLEVEQEIRAFSFQLI 121 gi|227809840_A/California/04/2     QALQLLLEVEQEIRAFSFQLI 121 gi|227977156_A/California/08/2     QALQLLLEVEQEIRAFSFQLI 121 gi|227977124_A/California/08/2     QALQLLLEVEQEIRAFSFQLI 121 gi|229396499_A/Ohio/07/2009        QALQLLLEVEQEIRAFSFQLI 121 gi|229536008_A/Kansas/03/2009      QALQLLLEVEQEIRAFSFQLI 121 gi|229396476_A/New_York/19/200     QALQLLLEVEQEIRAFSFQLI 121 gi|229396461_A/Texas/06/2009       QALQLLLEVEQEIRAFSFQLI 121 gi|229396401_A/New_York/31/200     QALQLLLEVEQEIRAFSFQLI 121 gi|229396412_A/New_York/23/200     QALQLLLEVEQEIRAFSFQLI 121 gi|229396386_A/New_York/18/200     QALQLLLEVEQEIRAFSFQLI 121 gi|229396448_A/New_York/15/200     QALQLLLEVEQEIRAFSFQLI 121 gi|229396350_A/New_York/12/200     QALQLLLEVEQEIRAFSFQLI 121 gi|229396372_A/New_York/11/200     QALQLLLEVEQEIRAFSFQLI 121 gi|229396432_A/New_York/10/200     QALQLLLEVEQEIRAFSFQLI 121 gi|229396362_A/New_York/06/200     QALQLLLEVEQEIRAFSFQLI 121 gi|229484057_A/Mexico/InDRE448     QALQLLLEVEQEIRAFSFQLI 121 gi|229484060_A/Canada-ON/RV152     QALQLLLEVEQEIRAFSFQLI 121 gi|229484055_A/Canada-NS/RV153     QALQLLLEVEQEIRAFSFQLI 121 gi|229462704_A/Valencia/GP4/20     QALQLLLEVEQEIRAFSFQLI 121 gi|229462716_A/Pais_Vasco/GP20     QALQLLLEVEQEIRAFSFQLI 121 gi|229462728_A/Castilla-La_Man     QALQLLLEVEQEIRAFSFQLI 121 gi|229462692_A/Castilla-La_Man     QALQLLLEVEQEIRAFSFQLI 121 gi|229535810_A/Texas/09/2009       QALQLLLEVEQEIRAFSFQLI 121 gi|229535992_A/South_Carolina/     QALQLLLEVEQEIRAFSFQLI 121 gi|229536032_A/Minnesota/02/20     QALQLLLEVEQEIRAFSFQLI 121 gi|229536116_A/Michigan/02/200     QALQLLLEVEQEIRAFSFQLI 121 gi|229535828_A/California/14/2     QALQLLLEVEQEIRAFSFQLI 121 gi|229536017_A/Arizona/01/2009     QALQLLLEVEQEIRAFSFQLI 121 gi|229783408_A/New_York/1682/2     QALQLLLEVEQEIRAFSFQLI 121 gi|229783387_A/New_York/1669/2     QALQLLLEVEQEIRAFSFQLI 121 gi|229892757_A/Mexico/InDRE411     QALQLLLEVEQEIRAFSFQLI 121 gi|229892760_A/Canada-ON/RV152     QALQLLLEVEQEIRAFSFQLI 121 gi|229892769_A/Canada-ON/RV152     QALQLLLEVEQEIRAFSFQLI 121 gi|229892766_A/Canada-NS/RV153     QALQLLLEVEQEIRAFSFQLI 121 gi|229892763_A/Canada-AB/RV153     QALQLLLEVEQEIRAFSFQLI 121 gi|237511857_A/Mexico/4604/200     QALQLLLEVEQEIRAFSFQLI 121 gi|237511866_A/Mexico/4603/200     QALQLLLEVEQEIRAFSFQLI 121 gi|237511860_A/Mexico/4486/200     QALQLLLEVEQEIRAFSFQLI 121 gi|237511872_A/Mexico/4115/200     QALQLLLEVEQEIRAFSFQLI 121 gi|237511869_A/Mexico/4108/200     QALQLLLEVEQEIRAFSFQLI 121 gi|229783374_A/Korea/01/2009       QALQLLLEVEQEIRAFSFQLI 121 gi|229892755_A/Canada-NS/RV153     QALQLLLEVEQEIRTFSFQLI 121 gi|229598887_A/Texas/15/2009       QALQLLLEVEQEIRAFSFQLI 121 gi|228017754_A/California/06/2     QALQLLLEVEQEIRAFSFQLI 121 gi|229536106_A/Nebraska/02/200     QALQLLLEVEQEIRAFSFQLI 121 gi|237624336_A/swine/Alberta/O     QALQLLLEVEQEIRAFSFQLI 121 **************:**